IL_8WV1_025

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

GCU*AAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WV1_025 not in the Motif Atlas

Homologous match to IL_9DFE_030

Geometric discrepancy: 0.1222

The information below is about IL_9DFE_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82096.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

8WV1|1|A|G|922
8WV1|1|A|C|923
8WV1|1|A|U|924
*
8WV1|1|A|A|945
8WV1|1|A|A|946
8WV1|1|A|A|947
8WV1|1|A|C|948

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L16

Chain U

50S ribosomal protein L25