IL_8WV1_039

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8WV1|1|A|U|1256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WV1_039 not in the Motif Atlas

Homologous match to IL_9DFE_046

Geometric discrepancy: 0.1865

The information below is about IL_9DFE_046

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

8WV1|1|A|C|1253
8WV1|1|A|G|1254
8WV1|1|A|A|1255
8WV1|1|A|U|1256
8WV1|1|A|G|1257
8WV1|1|A|A|1258
8WV1|1|A|A|1259
8WV1|1|A|G|1260
*
8WV1|1|A|U|1280
8WV1|1|A|G|1281
8WV1|1|A|G|1282
8WV1|1|A|A|1283
8WV1|1|A|G|1284

Current chains

Chain A

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L20