IL_8WV1_040

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

GACC*GGC

Length

7 nucleotides

Bulged bases

8WV1|1|A|A|1265

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WV1_040 not in the Motif Atlas

Geometric match to IL_4V88_455

Geometric discrepancy: 0.2571

The information below is about IL_4V88_455

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8WV1|1|A|G|1264
8WV1|1|A|A|1265
8WV1|1|A|C|1266
8WV1|1|A|C|1267
*
8WV1|1|A|G|1274
8WV1|1|A|G|1275
8WV1|1|A|C|1276

Current chains

Chain A

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L20

Chain Q

50S ribosomal protein L21