IL_8WV1_043
3D structure
- PDB id
- 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.99 Å
Loop
- Sequence
- UGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WV1_043 not in the Motif Atlas
- Homologous match to IL_9DFE_052
- Geometric discrepancy: 0.2295
- The information below is about IL_9DFE_052
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_05821.1
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
8WV1|1|A|U|1403
8WV1|1|A|G|1404
8WV1|1|A|A|1405
8WV1|1|A|A|1406
8WV1|1|A|G|1407
*
8WV1|1|A|C|1416
8WV1|1|A|G|1417
8WV1|1|A|U|1418
8WV1|1|A|A|1419
8WV1|1|A|G|1420
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain C
- 50S ribosomal protein L2
- Chain W
- Large ribosomal subunit protein bL28
Coloring options: