IL_8WV1_050

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WV1_050 not in the Motif Atlas

Homologous match to IL_9DFE_059

Geometric discrepancy: 0.1958

The information below is about IL_9DFE_059

Detailed Annotation

UAA/GAN variation

Broad Annotation

No text annotation

Motif group

IL_45790.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

8WV1|1|A|A|1516
8WV1|1|A|G|1517
8WV1|1|A|A|1518
8WV1|1|A|A|1519
8WV1|1|A|G|1520
*
8WV1|1|A|U|1566
8WV1|1|A|G|1567
8WV1|1|A|G|1568
8WV1|1|A|U|1569

Current chains

Chain A

23S rRNA

Nearby chains