IL_8WV1_053

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

8WV1|1|A|C|1590

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WV1_053 not in the Motif Atlas

Homologous match to IL_9DFE_062

Geometric discrepancy: 0.1697

The information below is about IL_9DFE_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25943.2

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8WV1|1|A|G|1572
8WV1|1|A|G|1573
8WV1|1|A|A|1574
8WV1|1|A|A|1575
8WV1|1|A|G|1576
*
8WV1|1|A|U|1587
8WV1|1|A|G|1588
8WV1|1|A|A|1589
8WV1|1|A|C|1590
8WV1|1|A|A|1591
8WV1|1|A|A|1592
8WV1|1|A|C|1593

Current chains

Chain A

23S rRNA

Nearby chains