IL_8WV1_060

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

8WV1|1|A|G|1832, 8WV1|1|A|G|1847, 8WV1|1|A|U|1851

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WV1_060 not in the Motif Atlas

Homologous match to IL_9DFE_070

Geometric discrepancy: 0.1764

The information below is about IL_9DFE_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8WV1|1|A|U|1829
8WV1|1|A|G|1830
8WV1|1|A|C|1831
8WV1|1|A|G|1832
8WV1|1|A|A|1833
8WV1|1|A|A|1834
8WV1|1|A|C|1835
*
8WV1|1|A|G|1844
8WV1|1|A|G|1845
8WV1|1|A|A|1846
8WV1|1|A|G|1847
8WV1|1|A|G|1848
8WV1|1|A|U|1849
8WV1|1|A|A|1850
8WV1|1|A|U|1851
8WV1|1|A|A|1852

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2