IL_8WV1_067

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

CGAAA(5MU)UC(5MC)UUGU*AC(5MC)UG

Length

18 nucleotides

Bulged bases

8WV1|1|A|A|1959, 8WV1|1|A|A|1960, 8WV1|1|A|5MU|1961, 8WV1|1|A|U|1966, 8WV1|1|A|U|1985

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8WV1|1|A|C|1956
8WV1|1|A|G|1957
8WV1|1|A|A|1958
8WV1|1|A|A|1959
8WV1|1|A|A|1960
8WV1|1|A|5MU|1961
8WV1|1|A|U|1962
8WV1|1|A|C|1963
8WV1|1|A|5MC|1964
8WV1|1|A|U|1965
8WV1|1|A|U|1966
8WV1|1|A|G|1967
8WV1|1|A|U|1968
*
8WV1|1|A|A|1982
8WV1|1|A|C|1983
8WV1|1|A|5MC|1984
8WV1|1|A|U|1985
8WV1|1|A|G|1986

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2