IL_8WV1_071

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

CAG*CGGG

Length

7 nucleotides

Bulged bases

8WV1|1|A|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WV1_071 not in the Motif Atlas

Homologous match to IL_9DFE_082

Geometric discrepancy: 0.2209

The information below is about IL_9DFE_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87316.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

12

Unit IDs

8WV1|1|A|C|2103
8WV1|1|A|A|2104
8WV1|1|A|G|2105
*
8WV1|1|A|C|2248
8WV1|1|A|G|2249
8WV1|1|A|G|2250
8WV1|1|A|G|2251

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain W

Large ribosomal subunit protein bL28