IL_8WV1_073

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

CCUG*CUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WV1_073 not in the Motif Atlas

Geometric match to IL_6L0Y_002

Geometric discrepancy: 0.3189

The information below is about IL_6L0Y_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_10994.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8WV1|1|A|C|2129
8WV1|1|A|C|2130
8WV1|1|A|U|2131
8WV1|1|A|G|2132
*
8WV1|1|A|C|2201
8WV1|1|A|U|2202
8WV1|1|A|G|2203
8WV1|1|A|G|2204

Current chains

Chain A

23S rRNA

Nearby chains