IL_8WV1_074

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

8WV1|1|A|G|2138, 8WV1|1|A|A|2139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WV1_074 not in the Motif Atlas

Homologous match to IL_9DFE_085

Geometric discrepancy: 0.2831

The information below is about IL_9DFE_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8WV1|1|A|G|2132
8WV1|1|A|C|2133
8WV1|1|A|G|2134
8WV1|1|A|U|2135
8WV1|1|A|A|2136
8WV1|1|A|G|2137
8WV1|1|A|G|2138
8WV1|1|A|A|2139
8WV1|1|A|U|2140
8WV1|1|A|A|2141
8WV1|1|A|G|2142
*
8WV1|1|A|C|2200
8WV1|1|A|C|2201

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L33