IL_8WV1_098

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

ACCC*GGAAGU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WV1_098 not in the Motif Atlas

Homologous match to IL_7A0S_104

Geometric discrepancy: 0.5962

The information below is about IL_7A0S_104

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05192.7

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8WV1|1|B|A|29
8WV1|1|B|C|30
8WV1|1|B|C|31
8WV1|1|B|C|32
*
8WV1|1|B|G|50
8WV1|1|B|G|51
8WV1|1|B|A|52
8WV1|1|B|A|53
8WV1|1|B|G|54
8WV1|1|B|U|55

Current chains

Chain B

5S rRNA

Nearby chains

Chain F

50S ribosomal protein L5

Chain N

50S ribosomal protein L18