IL_8WV1_101
3D structure
- PDB id
- 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.99 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WV1_101 not in the Motif Atlas
- Homologous match to IL_9DFE_001
- Geometric discrepancy: 0.1386
- The information below is about IL_9DFE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22311.2
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
8WV1|1|a|G|24
8WV1|1|a|U|25
8WV1|1|a|G|26
8WV1|1|a|G|27
8WV1|1|a|A|28
8WV1|1|a|U|29
8WV1|1|a|G|30
*
8WV1|1|a|C|535
8WV1|1|a|U|536
8WV1|1|a|G|537
8WV1|1|a|A|538
8WV1|1|a|A|539
8WV1|1|a|A|540
8WV1|1|a|C|541
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 5
- 50S ribosomal protein L32
- Chain p
- 50S ribosomal protein L20
- Chain r
- 50S ribosomal protein L22
Coloring options: