IL_8WV1_111
3D structure
- PDB id
- 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.99 Å
Loop
- Sequence
- GAAC*GAGUGAAAUAGAGC
- Length
- 18 nucleotides
- Bulged bases
- 8WV1|1|a|U|529, 8WV1|1|a|G|533
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WV1_111 not in the Motif Atlas
- Geometric match to IL_8VTW_013
- Geometric discrepancy: 0.1098
- The information below is about IL_8VTW_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
8WV1|1|a|G|507
8WV1|1|a|A|508
8WV1|1|a|A|509
8WV1|1|a|C|510
*
8WV1|1|a|G|521
8WV1|1|a|A|522
8WV1|1|a|G|523
8WV1|1|a|U|524
8WV1|1|a|G|525
8WV1|1|a|A|526
8WV1|1|a|A|527
8WV1|1|a|A|528
8WV1|1|a|U|529
8WV1|1|a|A|530
8WV1|1|a|G|531
8WV1|1|a|A|532
8WV1|1|a|G|533
8WV1|1|a|C|534
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain r
- 50S ribosomal protein L22
- Chain t
- Large ribosomal subunit protein uL24
Coloring options: