IL_8WV1_120

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

CGC*GGAG

Length

7 nucleotides

Bulged bases

8WV1|1|a|G|977

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WV1_120 not in the Motif Atlas

Geometric match to IL_8VTW_024

Geometric discrepancy: 0.1845

The information below is about IL_8VTW_024

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

8WV1|1|a|C|891
8WV1|1|a|G|892
8WV1|1|a|C|893
*
8WV1|1|a|G|976
8WV1|1|a|G|977
8WV1|1|a|A|978
8WV1|1|a|G|979

Current chains

Chain a

23S rRNA

Nearby chains

Chain y

50S ribosomal protein L30