IL_8WV1_122

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

CUGAC*GGUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WV1_122 not in the Motif Atlas

Homologous match to IL_9DFE_025

Geometric discrepancy: 0.2208

The information below is about IL_9DFE_025

Detailed Annotation

Stack outside cWW

Broad Annotation

Stack outside cWW

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

8WV1|1|a|C|893
8WV1|1|a|U|894
8WV1|1|a|G|895
8WV1|1|a|A|896
8WV1|1|a|C|897
*
8WV1|1|a|G|973
8WV1|1|a|G|974
8WV1|1|a|U|975
8WV1|1|a|G|976

Current chains

Chain a

23S rRNA

Nearby chains

Chain b

5S ribosomal RNA; 5S rRNA

Chain y

50S ribosomal protein L30