IL_8WV1_125
3D structure
- PDB id
- 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.99 Å
Loop
- Sequence
- GCACU*AAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WV1_125 not in the Motif Atlas
- Homologous match to IL_4WF9_033
- Geometric discrepancy: 0.1737
- The information below is about IL_4WF9_033
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_16301.1
- Basepair signature
- cWW-cWS-tWH-R-L-R-cWW
- Number of instances in this motif group
- 9
Unit IDs
8WV1|1|a|G|911
8WV1|1|a|C|912
8WV1|1|a|A|913
8WV1|1|a|C|914
8WV1|1|a|U|915
*
8WV1|1|a|A|955
8WV1|1|a|A|956
8WV1|1|a|A|957
8WV1|1|a|C|958
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain l
- 50S ribosomal protein L16
- Chain u
- 50S ribosomal protein L25
Coloring options: