IL_8WV1_126
3D structure
- PDB id
- 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.99 Å
Loop
- Sequence
- GCUAG*CAAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WV1_126 not in the Motif Atlas
- Geometric match to IL_8CRE_114
- Geometric discrepancy: 0.3325
- The information below is about IL_8CRE_114
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
8WV1|1|a|G|922
8WV1|1|a|C|923
8WV1|1|a|U|924
8WV1|1|a|A|925
8WV1|1|a|G|926
*
8WV1|1|a|C|944
8WV1|1|a|A|945
8WV1|1|a|A|946
8WV1|1|a|A|947
8WV1|1|a|C|948
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain l
- 50S ribosomal protein L16
- Chain u
- 50S ribosomal protein L25
Coloring options: