IL_8WV1_129
3D structure
- PDB id
- 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.99 Å
Loop
- Sequence
- CCAG*CUG
- Length
- 7 nucleotides
- Bulged bases
- 8WV1|1|a|C|1041
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WV1_129 not in the Motif Atlas
- Geometric match to IL_4YHW_001
- Geometric discrepancy: 0.2783
- The information below is about IL_4YHW_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
8WV1|1|a|C|1040
8WV1|1|a|C|1041
8WV1|1|a|A|1042
8WV1|1|a|G|1043
*
8WV1|1|a|C|1204
8WV1|1|a|U|1205
8WV1|1|a|G|1206
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain i
- 50S ribosomal protein L13
- Chain p
- 50S ribosomal protein L20
- Chain q
- 50S ribosomal protein L21
- Chain y
- 50S ribosomal protein L30
Coloring options: