IL_8WV1_131
3D structure
- PDB id
- 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.99 Å
Loop
- Sequence
- CCCCCAAG*CG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WV1_131 not in the Motif Atlas
- Homologous match to IL_4WF9_037
- Geometric discrepancy: 0.1813
- The information below is about IL_4WF9_037
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_46868.1
- Basepair signature
- cWW-L-cWW-L-L-R-L-R
- Number of instances in this motif group
- 5
Unit IDs
8WV1|1|a|C|1050
8WV1|1|a|C|1051
8WV1|1|a|C|1052
8WV1|1|a|C|1053
8WV1|1|a|C|1054
8WV1|1|a|A|1055
8WV1|1|a|A|1056
8WV1|1|a|G|1057
*
8WV1|1|a|C|1196
8WV1|1|a|G|1197
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain i
- 50S ribosomal protein L13
- Chain p
- 50S ribosomal protein L20
Coloring options: