IL_8WV1_135
3D structure
- PDB id
- 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.99 Å
Loop
- Sequence
- GGUAAAG*CGAAAAUGAUCGGGGC
- Length
- 23 nucleotides
- Bulged bases
- 8WV1|1|a|U|1072, 8WV1|1|a|A|1173, 8WV1|1|a|U|1176
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WV1_135 not in the Motif Atlas
- Homologous match to IL_9DFE_039
- Geometric discrepancy: 0.1274
- The information below is about IL_9DFE_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
8WV1|1|a|G|1070
8WV1|1|a|G|1071
8WV1|1|a|U|1072
8WV1|1|a|A|1073
8WV1|1|a|A|1074
8WV1|1|a|A|1075
8WV1|1|a|G|1076
*
8WV1|1|a|C|1170
8WV1|1|a|G|1171
8WV1|1|a|A|1172
8WV1|1|a|A|1173
8WV1|1|a|A|1174
8WV1|1|a|A|1175
8WV1|1|a|U|1176
8WV1|1|a|G|1177
8WV1|1|a|A|1178
8WV1|1|a|U|1179
8WV1|1|a|C|1180
8WV1|1|a|G|1181
8WV1|1|a|G|1182
8WV1|1|a|G|1183
8WV1|1|a|G|1184
8WV1|1|a|C|1185
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 9
- 50S ribosomal protein L36
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain d
- 50S ribosomal protein L3
- Chain i
- 50S ribosomal protein L13
- Chain l
- 50S ribosomal protein L16
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