IL_8WV1_148

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

8WV1|1|a|U|1466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WV1_148 not in the Motif Atlas

Homologous match to IL_9DFE_054

Geometric discrepancy: 0.2004

The information below is about IL_9DFE_054

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

8WV1|1|a|C|1463
8WV1|1|a|G|1464
8WV1|1|a|A|1465
8WV1|1|a|U|1466
8WV1|1|a|G|1467
*
8WV1|1|a|C|1624
8WV1|1|a|U|1625
8WV1|1|a|A|1626
8WV1|1|a|A|1627
8WV1|1|a|G|1628

Current chains

Chain a

23S rRNA

Nearby chains