IL_8WV1_168

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WV1_168 not in the Motif Atlas

Homologous match to IL_9DFE_074

Geometric discrepancy: 0.2014

The information below is about IL_9DFE_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

UAA/GAN with extra stack

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8WV1|1|a|U|1882
8WV1|1|a|C|1883
8WV1|1|a|A|1884
8WV1|1|a|A|1885
8WV1|1|a|G|1886
*
8WV1|1|a|C|1909
8WV1|1|a|G|1910
8WV1|1|a|A|1911
8WV1|1|a|A|1912
8WV1|1|a|G|1913

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain w

Large ribosomal subunit protein bL28