IL_8WV1_169
3D structure
- PDB id
- 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.99 Å
Loop
- Sequence
- GGGAG*CGAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WV1_169 not in the Motif Atlas
- Homologous match to IL_9DFE_075
- Geometric discrepancy: 0.152
- The information below is about IL_9DFE_075
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_15190.2
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 24
Unit IDs
8WV1|1|a|G|1887
8WV1|1|a|G|1888
8WV1|1|a|G|1889
8WV1|1|a|A|1890
8WV1|1|a|G|1891
*
8WV1|1|a|C|1904
8WV1|1|a|G|1905
8WV1|1|a|A|1906
8WV1|1|a|A|1907
8WV1|1|a|C|1908
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain w
- Large ribosomal subunit protein bL28
Coloring options: