IL_8WV1_172
3D structure
- PDB id
- 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.99 Å
Loop
- Sequence
- GGCAG*CGCC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WV1_172 not in the Motif Atlas
- Geometric match to IL_1J2B_001
- Geometric discrepancy: 0.2899
- The information below is about IL_1J2B_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_69301.1
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
8WV1|1|a|G|2070
8WV1|1|a|G|2071
8WV1|1|a|C|2072
8WV1|1|a|A|2073
8WV1|1|a|G|2074
*
8WV1|1|a|C|2629
8WV1|1|a|G|2630
8WV1|1|a|C|2631
8WV1|1|a|C|2632
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 5
- 50S ribosomal protein L32
- Chain d
- 50S ribosomal protein L3
- Chain i
- 50S ribosomal protein L13
Coloring options: