IL_8WV1_174

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8WV1|1|a|U|2090

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WV1_174 not in the Motif Atlas

Homologous match to IL_7A0S_075

Geometric discrepancy: 0.1446

The information below is about IL_7A0S_075

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8WV1|1|a|G|2089
8WV1|1|a|U|2090
8WV1|1|a|G|2091
*
8WV1|1|a|C|2454
8WV1|1|a|C|2455

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain k

50S ribosomal protein L15