IL_8WV1_188

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

GCUC*GCGAGC

Length

10 nucleotides

Bulged bases

8WV1|1|a|G|2588, 8WV1|1|a|A|2589

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WV1_188 not in the Motif Atlas

Geometric match to IL_5EW4_001

Geometric discrepancy: 0.359

The information below is about IL_5EW4_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_76776.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

5

Unit IDs

8WV1|1|a|G|2521
8WV1|1|a|C|2522
8WV1|1|a|U|2523
8WV1|1|a|C|2524
*
8WV1|1|a|G|2586
8WV1|1|a|C|2587
8WV1|1|a|G|2588
8WV1|1|a|A|2589
8WV1|1|a|G|2590
8WV1|1|a|C|2591

Current chains

Chain a

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L32

Chain d

50S ribosomal protein L3