IL_8WV1_198

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

GGG*CGAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WV1_198 not in the Motif Atlas

Homologous match to IL_4WF9_107

Geometric discrepancy: 0.2172

The information below is about IL_4WF9_107

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05502.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

8WV1|1|a|G|2853
8WV1|1|a|G|2854
8WV1|1|a|G|2855
*
8WV1|1|a|C|2881
8WV1|1|a|G|2882
8WV1|1|a|A|2883
8WV1|1|a|C|2884

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain m

50S ribosomal protein L17

Chain o

50S ribosomal protein L19