IL_8X5V_001

3D structure

PDB id

8X5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

BlCas9-sgRNA-target DNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

2 Å

Loop

Sequence

UUCC*GUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

8X5V|1|B|U|28
8X5V|1|B|U|29
8X5V|1|B|C|30
8X5V|1|B|C|31
*
8X5V|1|B|G|40
8X5V|1|B|U|41
8X5V|1|B|U|42
8X5V|1|B|G|43

Current chains

Chain B

RNA (110-mer)

Nearby chains

Chain A

BlCas9