IL_8XP3_037

3D structure

PDB id

8XP3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with LARP1 and LRRC47

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XP3_037 not in the Motif Atlas

Homologous match to IL_8C3A_427

Geometric discrepancy: 0.0865

The information below is about IL_8C3A_427

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

8XP3|1|S2|G|673
8XP3|1|S2|C|674
8XP3|1|S2|U|675
*
8XP3|1|S2|A|1030
8XP3|1|S2|A|1031
8XP3|1|S2|C|1032

Current chains

Chain S2

18S rRNA

Nearby chains

Chain JC

Leucine-rich repeat-containing protein 47

Chain SN

40S ribosomal protein S13