IL_8XP3_053
3D structure
- PDB id
- 8XP3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 40S ribosome with LARP1 and LRRC47
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGAU*GCAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XP3_053 not in the Motif Atlas
- Homologous match to IL_8P9A_426
- Geometric discrepancy: 0.0892
- The information below is about IL_8P9A_426
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
8XP3|1|S2|C|1098
8XP3|1|S2|G|1099
8XP3|1|S2|A|1100
8XP3|1|S2|U|1101
*
8XP3|1|S2|G|1131
8XP3|1|S2|C|1132
8XP3|1|S2|A|1133
8XP3|1|S2|G|1134
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SA
- 40S ribosomal protein SA
- Chain SB
- 40S ribosomal protein S3a
- Chain SN
- 40S ribosomal protein S13
- Chain SR
- 40S ribosomal protein S17
- Chain Sa
- 40S ribosomal protein S26
- Chain Sb
- 40S ribosomal protein S27
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