IL_8XP3_065

3D structure

PDB id

8XP3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with LARP1 and LRRC47

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XP3_065 not in the Motif Atlas

Homologous match to IL_8P9A_436

Geometric discrepancy: 0.2784

The information below is about IL_8P9A_436

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38565.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

12

Unit IDs

8XP3|1|S2|A|1291
8XP3|1|S2|C|1292
8XP3|1|S2|A|1293
*
8XP3|1|S2|U|1306
8XP3|1|S2|U|1307
8XP3|1|S2|U|1308

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Sd

40S ribosomal protein S29

Chain Sf

Ubiquitin-40S ribosomal protein S27a