IL_8XP3_074

3D structure

PDB id

8XP3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with LARP1 and LRRC47

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

8XP3|1|S2|C|1403, 8XP3|1|S2|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XP3_074 not in the Motif Atlas

Homologous match to IL_8C3A_462

Geometric discrepancy: 0.1517

The information below is about IL_8C3A_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25234.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

8XP3|1|S2|A|1402
8XP3|1|S2|C|1403
8XP3|1|S2|U|1404
8XP3|1|S2|A|1405
*
8XP3|1|S2|U|1441
8XP3|1|S2|U|1442
8XP3|1|S2|C|1443
8XP3|1|S2|U|1444

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SD

40S ribosomal protein S3

Chain SQ

40S ribosomal protein S16

Chain SU

40S ribosomal protein S20