IL_8XP3_075

3D structure

PDB id

8XP3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with LARP1 and LRRC47

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

8XP3|1|S2|C|1433, 8XP3|1|S2|C|1434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XP3_075 not in the Motif Atlas

Geometric match to IL_3R2D_001

Geometric discrepancy: 0.1555

The information below is about IL_3R2D_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8XP3|1|S2|U|1408
8XP3|1|S2|A|1409
*
8XP3|1|S2|U|1432
8XP3|1|S2|C|1433
8XP3|1|S2|C|1434
8XP3|1|S2|C|1435
8XP3|1|S2|C|1436
8XP3|1|S2|C|1437
8XP3|1|S2|A|1438

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain SU

40S ribosomal protein S20