IL_8XP3_082

3D structure

PDB id

8XP3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with LARP1 and LRRC47

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8XP3|1|S2|C|1701, 8XP3|1|S2|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XP3_082 not in the Motif Atlas

Homologous match to IL_8P9A_452

Geometric discrepancy: 0.1685

The information below is about IL_8P9A_452

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8XP3|1|S2|C|1700
8XP3|1|S2|C|1701
8XP3|1|S2|G|1702
*
8XP3|1|S2|C|1833
8XP3|1|S2|A|1834
8XP3|1|S2|A|1835
8XP3|1|S2|G|1836

Current chains

Chain S2

18S rRNA

Nearby chains

Chain JD

La-related protein 1

Chain SC

40S ribosomal protein S2

Chain Sa

40S ribosomal protein S26