IL_8XP3_083

3D structure

PDB id

8XP3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with LARP1 and LRRC47

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XP3_083 not in the Motif Atlas

Homologous match to IL_8C3A_471

Geometric discrepancy: 0.0934

The information below is about IL_8C3A_471

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

8XP3|1|S2|G|1702
8XP3|1|S2|C|1703
8XP3|1|S2|C|1704
8XP3|1|S2|C|1705
*
8XP3|1|S2|G|1829
8XP3|1|S2|U|1830
8XP3|1|S2|A|1831
8XP3|1|S2|A|1832
8XP3|1|S2|C|1833

Current chains

Chain S2

18S rRNA

Nearby chains

Chain JD

La-related protein 1

Chain Ln

60S ribosomal protein L41