IL_8XP3_087

3D structure

PDB id

8XP3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with LARP1 and LRRC47

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XP3_087 not in the Motif Atlas

Homologous match to IL_8P9A_457

Geometric discrepancy: 0.3563

The information below is about IL_8P9A_457

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

8XP3|1|S2|C|1717
8XP3|1|S2|G|1718
8XP3|1|S2|A|1719
8XP3|1|S2|U|1720
*
8XP3|1|S2|A|1813
8XP3|1|S2|G|1814
8XP3|1|S2|A|1815
8XP3|1|S2|G|1816

Current chains

Chain S2

18S rRNA

Nearby chains

Chain JC

Leucine-rich repeat-containing protein 47

Chain Ln

60S ribosomal protein L41