IL_8XP3_090

3D structure

PDB id

8XP3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with LARP1 and LRRC47

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAG*CGAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XP3_090 not in the Motif Atlas

Homologous match to IL_8P9A_460

Geometric discrepancy: 0.1039

The information below is about IL_8P9A_460

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

8XP3|1|S2|U|1733
8XP3|1|S2|G|1734
8XP3|1|S2|A|1735
8XP3|1|S2|G|1736
*
8XP3|1|S2|C|1798
8XP3|1|S2|G|1799
8XP3|1|S2|A|1800
8XP3|1|S2|A|1801

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8