IL_8XSX_119

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

8XSX|1|L5|A|3663, 8XSX|1|L5|U|3679, 8XSX|1|L5|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSX_119 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0627

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8XSX|1|L5|C|3660
8XSX|1|L5|G|3661
8XSX|1|L5|A|3662
8XSX|1|L5|A|3663
8XSX|1|L5|G|3664
8XSX|1|L5|G|3665
*
8XSX|1|L5|U|3677
8XSX|1|L5|G|3678
8XSX|1|L5|U|3679
8XSX|1|L5|U|3680
8XSX|1|L5|G|3681
8XSX|1|L5|A|3682
8XSX|1|L5|C|3683
8XSX|1|L5|G|3684

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA