IL_8XSX_124

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8XSX|1|L5|A|3785, 8XSX|1|L5|C|3791, 8XSX|1|L5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSX_124 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.0793

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8XSX|1|L5|C|3781
8XSX|1|L5|C|3782
8XSX|1|L5|A|3783
8XSX|1|L5|A|3784
8XSX|1|L5|A|3785
8XSX|1|L5|U|3786
8XSX|1|L5|G|3787
8XSX|1|L5|C|3788
8XSX|1|L5|C|3789
8XSX|1|L5|U|3790
8XSX|1|L5|C|3791
8XSX|1|L5|G|3792
*
8XSX|1|L5|C|3808
8XSX|1|L5|G|3809
8XSX|1|L5|C|3810
8XSX|1|L5|G|3811

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA