IL_8XSX_144

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

8XSX|1|L5|G|4522, 8XSX|1|L5|A|4523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSX_144 not in the Motif Atlas

Geometric match to IL_5TBW_108

Geometric discrepancy: 0.0742

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8XSX|1|L5|C|4456
8XSX|1|L5|U|4457
8XSX|1|L5|C|4458
*
8XSX|1|L5|G|4520
8XSX|1|L5|U|4521
8XSX|1|L5|G|4522
8XSX|1|L5|A|4523
8XSX|1|L5|G|4524

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23