IL_8XSX_151

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

8XSX|1|L5|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSX_151 not in the Motif Atlas

Geometric match to IL_6E7L_002

Geometric discrepancy: 0.3762

The information below is about IL_6E7L_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_10484.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

8XSX|1|L5|C|4582
8XSX|1|L5|C|4583
8XSX|1|L5|A|4584
8XSX|1|L5|U|4585
*
8XSX|1|L5|A|4717
8XSX|1|L5|G|4718
8XSX|1|L5|G|4719
8XSX|1|L5|C|4720
8XSX|1|L5|G|4721

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L13a