IL_8XSX_216

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAC*GGC

Length

6 nucleotides

Bulged bases

8XSX|1|S2|A|536

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSX_216 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.1702

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

8XSX|1|S2|G|535
8XSX|1|S2|A|536
8XSX|1|S2|C|537
*
8XSX|1|S2|G|546
8XSX|1|S2|G|547
8XSX|1|S2|C|548

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Se

40S ribosomal protein S30