IL_8XSX_218
3D structure
- PDB id
- 8XSX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XSX_218 not in the Motif Atlas
- Geometric match to IL_4V88_413
- Geometric discrepancy: 0.0729
- The information below is about IL_4V88_413
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 10
Unit IDs
8XSX|1|S2|A|599
8XSX|1|S2|G|600
8XSX|1|S2|G|601
8XSX|1|S2|G|602
8XSX|1|S2|C|603
8XSX|1|S2|A|604
8XSX|1|S2|A|605
8XSX|1|S2|G|606
*
8XSX|1|S2|C|636
8XSX|1|S2|U|637
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain CD
- SERPINE1 mRNA-binding protein 1
- Chain SC
- 40S ribosomal protein S2
- Chain SJ
- 40S ribosomal protein S9
- Chain Se
- 40S ribosomal protein S30
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