IL_8XSX_219
3D structure
- PDB id
- 8XSX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GUC*GC
- Length
- 5 nucleotides
- Bulged bases
- 8XSX|1|S2|U|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XSX_219 not in the Motif Atlas
- Homologous match to IL_8C3A_424
- Geometric discrepancy: 0.3127
- The information below is about IL_8C3A_424
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_89505.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 94
Unit IDs
8XSX|1|S2|G|606
8XSX|1|S2|U|607
8XSX|1|S2|C|608
*
8XSX|1|S2|G|635
8XSX|1|S2|C|636
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain CD
- SERPINE1 mRNA-binding protein 1
- Chain SD
- 40S ribosomal protein S3
- Chain SJ
- 40S ribosomal protein S9
- Chain SX
- 40S ribosomal protein S23
- Chain Se
- 40S ribosomal protein S30
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