IL_8XSX_255

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8XSX|1|S2|U|1326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSX_255 not in the Motif Atlas

Homologous match to IL_8C3A_455

Geometric discrepancy: 0.1113

The information below is about IL_8C3A_455

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

94

Unit IDs

8XSX|1|S2|G|1325
8XSX|1|S2|U|1326
8XSX|1|S2|G|1327
*
8XSX|1|S2|C|1502
8XSX|1|S2|C|1503

Current chains

Chain S2

18S rRNA

Nearby chains

Chain CB

Elongation factor 2

Chain SK

40S ribosomal protein S10

Chain Sd

40S ribosomal protein S29