IL_8XSX_260

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSX_260 not in the Motif Atlas

Homologous match to IL_8C3A_460

Geometric discrepancy: 0.1222

The information below is about IL_8C3A_460

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58310.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

8XSX|1|S2|C|1363
8XSX|1|S2|U|1364
8XSX|1|S2|G|1365
*
8XSX|1|S2|C|1374
8XSX|1|S2|G|1375

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SR

40S ribosomal protein S17

Chain Sa

40S ribosomal protein S26