IL_8XSX_285

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSX_285 not in the Motif Atlas

Homologous match to IL_8P9A_305

Geometric discrepancy: 0.0408

The information below is about IL_8P9A_305

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8XSX|1|L5|G|2847
8XSX|1|L5|G|2848
8XSX|1|L5|A|2849
8XSX|1|L5|A|2850
8XSX|1|L5|G|2851
8XSX|1|L5|U|2852
8XSX|1|L5|C|2853
8XSX|1|L5|G|2854
8XSX|1|L5|G|2855
*
8XSX|1|L5|C|3837
8XSX|1|L5|U|3838
8XSX|1|L5|G|3839
8XSX|1|L5|U|3840
8XSX|1|L5|C|3841

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23