IL_8XSY_118
3D structure
- PDB id
- 8XSY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGAAGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 8XSY|1|L5|A|3663, 8XSY|1|L5|U|3679, 8XSY|1|L5|C|3683
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XSY_118 not in the Motif Atlas
- Homologous match to IL_5TBW_083
- Geometric discrepancy: 0.0801
- The information below is about IL_5TBW_083
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8XSY|1|L5|C|3660
8XSY|1|L5|G|3661
8XSY|1|L5|A|3662
8XSY|1|L5|A|3663
8XSY|1|L5|G|3664
8XSY|1|L5|G|3665
*
8XSY|1|L5|U|3677
8XSY|1|L5|G|3678
8XSY|1|L5|U|3679
8XSY|1|L5|U|3680
8XSY|1|L5|G|3681
8XSY|1|L5|A|3682
8XSY|1|L5|C|3683
8XSY|1|L5|G|3684
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain Lp
- 60S ribosomal protein L37a
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: