IL_8XSY_122
3D structure
- PDB id
- 8XSY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CCAAAUGCCUCG*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 8XSY|1|L5|A|3785, 8XSY|1|L5|C|3791, 8XSY|1|L5|C|3810
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XSY_122 not in the Motif Atlas
- Geometric match to IL_5TBW_090
- Geometric discrepancy: 0.087
- The information below is about IL_5TBW_090
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_66080.1
- Basepair signature
- cWW-cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8XSY|1|L5|C|3781
8XSY|1|L5|C|3782
8XSY|1|L5|A|3783
8XSY|1|L5|A|3784
8XSY|1|L5|A|3785
8XSY|1|L5|U|3786
8XSY|1|L5|G|3787
8XSY|1|L5|C|3788
8XSY|1|L5|C|3789
8XSY|1|L5|U|3790
8XSY|1|L5|C|3791
8XSY|1|L5|G|3792
*
8XSY|1|L5|C|3808
8XSY|1|L5|G|3809
8XSY|1|L5|C|3810
8XSY|1|L5|G|3811
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain Ln
- 60S ribosomal protein L41
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: